Make a tab-delimited assignment file manually as below with any text editor or MS Excel then reserve it as assign_chromHMM.txt. You may duplicate & paste this example but you ought to be mindful the delimiters really should be tabs (tabs are often transformed into several white Areas when pasting).

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Nothing is more critical than to looking at initial-hand problems on the bottom and final results of steps taken.

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A. The area beneath the curve in plot makes group-averaged browse/peak quantity. The "density" was outlined so that the world underneath the (smoothed) curve tends to make overall aggregated read/peak figures.

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